PLEASE PLEASE PLEASE could you punctuate/paragraph-ize? I'd love to help but that's just super confusing...

You've got a LOT of light on your little clones.
What soil did you transplant into? Was it fresh or used? Did you fertilize with anything?
What are your temps? Roots gone= root rot. The 'drying from leaves not stems' sounds like rot too if it's what I'm imagining. Tips drying is too low humidity, but the bases of the blades browning is fungal.
Did you water when you transplanted? How heavily? With what? Do the cups have drain holes? Did you soak the cloning medium?

Removing the dome and hardening off the new clones is a slow process. Take it off for just a short time at first, then the next day take it off for longer, and see how long before you notice either droop or edges curning, put it back on. Repeat until there is no wilt/curl.